bionty_base.Disease#

class bionty_base.Disease(organism=None, source=None, version=None, **kwargs)#

Bases: PublicOntology

Disease ontologies.

1. Mondo Edits of terms are coordinated and reviewed on: monarch-initiative/mondo

2. Human Disease Ontology Edits of terms are coordinated and reviewed on: DiseaseOntology/HumanDiseaseOntology

3. International Classification of Diseases (ICD) Edits of terms are coordinated and reviewed on: https://www.who.int/standards/classifications/classification-of-diseases

Parameters:

  • organism (Optional[Literal['all', 'human']], default: None) – name of Organism entity.

  • source (Optional[Literal['mondo', 'doid', 'icd']], default: None) – The key of the source in the local.yml versions file. Get all available databases with .display_available_sources().

  • version (Optional[str], default: None) – The version of the ontology. Typically a date or an actual version. Get available versions with .display_available_sources().

Attributes

fields property#

All PublicOntology entity fields.

organism property#

The name of Organism.

source property#

Name of the source.

version property#

Version of the source.