bionty_base.BioSample#

class bionty_base.BioSample(organism=None, source=None, version=None, **kwargs)#

Bases: PublicOntology

BioSample attributes.

1. NCBI BioSample Attributes https://www.ncbi.nlm.nih.gov/biosample/docs/attributes

Parameters:

  • organism (Optional[Literal['all']], default: None) – name of Organism entity.

  • source (Optional[Literal['ncbi']], default: None) – The key of the source in the local.yml versions file. Get all available databases with .display_available_sources().

  • version (Optional[str], default: None) – The version of the ontology. Typically a date or an actual version. Get available versions with .display_available_sources().

Attributes

fields property#

All PublicOntology entity fields.

organism property#

The name of Organism.

source property#

Name of the source.

version property#

Version of the source.