bionty_base.ExperimentalFactor#

class bionty_base.ExperimentalFactor(organism=None, source=None, version=None, **kwargs)#

Bases: PublicOntology

Experimental Factor.

1. Experimental Factor Ontology Edits of terms are coordinated and reviewed on: https://www.ebi.ac.uk/ols/ontologies/efo

Parameters:

  • source (Optional[Literal['efo']], default: None) – The key of the source in the local.yml versions file. Get all available databases with .display_available_sources().

  • version (Optional[str], default: None) – The version of the ontology. Typically a date or an actual version. Get available versions with .display_available_sources().

Also see: bionty_base.PublicOntology

Attributes

fields property#

All PublicOntology entity fields.

organism property#

The name of Organism.

source property#

Name of the source.

version property#

Version of the source.

Methods

to_pronto()#

The Pronto Ontology object.

See: https://pronto.readthedocs.io/en/stable/api/pronto.Ontology.html

Return type:

Ontology