bionty_base.Pathway#

class bionty_base.Pathway(organism=None, source=None, version=None, **kwargs)#

Bases: PublicOntology

Pathway.

1. Gene Ontology Edits of terms are coordinated and reviewed on: https://bioportal.bioontology.org/ontologies/GO/?p=summary

2. Pathway Ontology Edits of terms are coordinated and reviewed on: https://bioportal.bioontology.org/ontologies/PW/?p=summary

Parameters:

  • organism (Optional[Literal['all']], default: None) – name of Organism entity.

  • source (Optional[Literal['go', 'pw']], default: None) – The key of the source in the local.yml versions file. Get all available databases with .display_available_sources().

  • version (Optional[str], default: None) – The version of the ontology. Typically a date or an actual version. Get available versions with .display_available_sources().

Attributes

fields property#

All PublicOntology entity fields.

organism property#

The name of Organism.

source property#

Name of the source.

version property#

Version of the source.